Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SKCM rs149017846 chr2:65750022 T/TA 6.11E-7 98 15.52 13.9 8.8 KM Plot
SKCM rs1495013 chr12:63428188 C/T 1.82E-7 101 15.3 14.3 8.8 KM Plot
SKCM rs149643284 chr5:578220 CA/C 0 99 15.02 13.4 6.33 KM Plot
SKCM rs149938398 chr5:611385 CCCCCTACACACT/C 0 100 15.13 13.4 6.33 KM Plot
SKCM rs149970499 chr5:595209 T/C 0 99 15.13 12 6.33 KM Plot
SKCM rs150272105 chr2:180850547 G/GTA 3.35E-5 100 15.13 13.72 9 KM Plot
SKCM rs150908864 chr11:62586829 C/CA 2.57E-5 100 15.13 13.03 9 KM Plot
SKCM rs1539358 chr1:96294141 G/A 3.43E-5 99 5.85 11.73 15.47 KM Plot
SKCM rs1633462 chr11:64546257 C/G 6.62E-7 100 14.73 15.73 8.8 KM Plot
SKCM rs168751 chr5:148438264 C/T 1.84E-5 100 15.02 13.8 9 KM Plot
SKCM rs16876180 chr8:29779153 G/T 2.89E-5 101 9 16.23 14.67 KM Plot
SKCM rs16908610 chr9:24611547 A/G 0 101 6.33 16.33 14.67 KM Plot
SKCM rs16911912 chr9:27893289 A/C 0 101 14.8 15.57 6.33 KM Plot
SKCM rs16967947 chr15:76473955 C/T 9.79E-13 97 14.85 18.45 6.33 KM Plot
SKCM rs16981771 chr19:48685877 G/A 6.73E-5 101 15.38 14.8 11.73 KM Plot